scRAPID-web

Prediction of protein-RNA interactions from single-cell transcriptomic data

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Select your Gene Regulatory Network Inference method:
DeepSEM TENET GRNBoost2
Select your organism:
Arabidopsis thaliana Caenorhabditis elegans Danio rerio Drosophila melanogaster Homo Sapiens Mus musculus Rattus norvegicus Xenopus tropicalis
Minimum number of counts for a gene to pass filtering:
Minimum number of cells in which a gene is expressed to pass filtering:
Selection of gene type(s) used for the inference:
Number of Highly Variable Genes:
1000 2000 3000

Upload the Expression Data File (.csv.gz or .csv required, Up to 50MB)

Upload the Metadata File (.csv required, Up to 5MB) - optional

Just trying out? Load an example!.