Global Score

The algorithm has been trained on PAR-/HITS-CLIP (Hafner et al. 2010) and validated on Xist interactions.

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Protein sequence (FASTA format - min 50 aa)

RNA sequence (FASTA format - min 1000 nt)

This module accepts text in fasta format. There is another version available that allows submission via file upload.

Fragmentation option (see Tutorial and Running times)

Uniform

Weighted

Score option (see Tutorial)

Global Score (raw profiles)

Signal Localization (normalized profiles using a reference set)

Just trying out? Use the following examples:

example of an interacting protein-RNA pair [Signal localization option]

example of a non-interacting protein-RNA pair [Global Score option] (Siprashvili et al. 2012)