Global Score

The algorithm has been trained on PAR-/HITS-CLIP (Hafner et al. 2010) and validated on Xist interactions.

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Fragmentation option (see Tutorial and Running times)

Uniform

Weighted

Score option (see Tutorial)

Global Score (raw profiles)

Signal Localization (normalized profiles using a reference set)

Protein sequence (FASTA format - min 50 aa)

RNA sequence (FASTA format - min 1000 nt)

Just trying out? Use the following examples: