catRAPID omics [transcript vs nucleotide-binding proteome]

Interaction prediction module between a transcript and the nucleotide-binding proteome of a model organism

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RNA sequence (FASTA format - min 50 nt)

This module accepts text in fasta format. There is another version available that allows submission via file upload.


Which library would you like to analyze?


Would you like to study interactions with nucleic acid binding domains?




Which type of proteins would you like to interrogate?




Would you like to include disordered proteins in your search?





Just trying out? Use the following examples:

RepA is predicted to bind polycomb group proteins (full length) [Agostini et al., 2012]

3'UTR of CRB3 is recognized by several proteins (RNA-binding domains) [Iioka et al., 2011]