catRAPID omics [protein vs coding and noncoding transcriptome]

Interaction prediction module between a protein and the transcriptome of a model organism

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Protein sequence (FASTA format - min 50 aa)

This module accepts text in fasta format. There is another version available that allows submission via file upload.

Which library would you like to analyze?

Caenorhabditis elegans

Danio rerio

Drosophila melanogaster

Homo sapiens

Mus musculus

Rattus norvegicus

Saccharomyces cerevisiae

Xenopus tropicalis

Custom library

Would you like to use nucleic acid binding domains?

No, use full-length protein instead (max 750aa)

Yes

Which type of nucleic acid binding domains would you like to use?

RNA-binding only

RNA- and DNA-binding

Would you like to include disordered regions in your search?

Yes

Which part of the transcriptome would you like to interrogate?

Coding

Noncoding

Just trying out? Use the following examples:

EZH2 protein (full-length) against the mouse transcriptome [Zhao et al., 2010]

TADBP protein (nucleic-acid-binding domains) against the rat transcriptome [Sephton et al., 2011]