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Protein–RNA
scRAPID-web catRAPID omics v2.1 (protein vs transcriptome) catRAPID omics v2.1 (transcripts vs RBPs) catRAPID omics v2.1 (custom protein vs custom RNA) catRAPID omics v2.2 (RNA mods) RNAct

Proteins
catGRANULE v2 HERCULES clever Suite Thermometer G4FUNNIES

RNA
catRAPID v2 RNA motifs RNA–RNA CROSS CROSSalive CROSSalign

Databases
Praline RNAct

Legacy algorithms
catRAPID signature Zyggregator Global Score omiXcore ccSOL ccSOL omics

catRAPID Express Human [protein vs transcriptome]

Interaction prediction module between a protein and the transcriptome

catRAPID Express Human » Documentation » Tutorial » FAQs » Licensing Notice » Group page @ IIT »

Protein sequence (FASTA format - min 50 aa)

Would you like to use nucleic acid binding domains?

No, use full-length protein instead (max 750aa)

Yes

Which type of nucleic acid binding domains would you like to use?

RNA-binding only

RNA- and DNA-binding

Would you like to include disordered regions in your search?

No

Yes

Which set of transcripts would you like to use?

Coding

Noncoding

Just trying out? Use the following examples:

© - RNA Systems Biology - Italian Institute of Technology (IIT)